1. Home
  2. Species
  3. Davallia denticulata
  4. Sequence
  5. Dde_g01522

Dde_g01522


Description : RsmB-type rRNA methyltransferase & original description: none


Gene families : OG0006886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006886_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g01522
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00208500 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT3G13180 No alias NOL1/NOP2/sun family protein / antitermination NusB... 0.03 OrthoFinder output from all 47 species
Ceric.10G067000.1 Ceric.10G067000 not classified & original description: pacid=50612186... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000903.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre50.g761447 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os09g30100.1 LOC_Os09g30100 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g24104 No alias RsmB-type rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18814 No alias RsmB-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Mp4g02490.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g45412 No alias RsmB-type rRNA methyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10309 No alias NSUN-group-II rRNA methyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06384 No alias RsmB-type rRNA methyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006027 NusB_RsmB_TIM44 109 217
IPR001678 MeTrfase_RsmB/NOP2 345 539
No external refs found!