Dde_g00939 (CHA18, CHR18)

Aliases : CHA18, CHR18

Description : chromatin remodeling factor *(SMARCAL1) & original description: none

Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g00939

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00037960	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Adi_g021948	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Ala_g21869	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Aop_g00780	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Ceric.09G005400.1	CHA18, CHR18,...	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species
Pir_g45727	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g41946	CHA18, CHR18	chromatin remodeling factor *(SMARCAL1) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
MF	GO:0016755	aminoacyltransferase activity	IEP	HCCA
MF	GO:0016756	glutathione gamma-glutamylcysteinyltransferase activity	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046937	phytochelatin metabolic process	IEP	HCCA
BP	GO:0046938	phytochelatin biosynthetic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	724	823
IPR000330	SNF2_N	432	668

External Links

No external refs found!