Dde_g00876 (emb1138)

Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g00876

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00127820	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
Adi_g054902	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g10440	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Als_g01062	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g03195	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene54441.t1	emb1138, Aspi01Gene54441	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s2641.g112487	emb1138	not classified & original description: CDS=202-2694	0.03	OrthoFinder output from all 47 species
Ceric.06G054800.1	emb1138, Ceric.06G054800	not classified & original description: pacid=50619432...	0.03	OrthoFinder output from all 47 species
Ceric.21G051700.1	emb1138, Ceric.21G051700	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.151	emb1138	DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020734.25	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53, mitochondrial...	0.03	OrthoFinder output from all 47 species
Dac_g01008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.07	OrthoFinder output from all 47 species
Dac_g02286	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g08101	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01000821001	PMH2, ATRH53	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
LOC_Os12g41715.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Lfl_g06681	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
MA_17924g0020	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.02	OrthoFinder output from all 47 species
Mp2g07080.1	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Msp_g01214	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g07399	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Sam_g06711	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Sam_g29659	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo150370	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Tin_g08271	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Tin_g15128	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g39635	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
CC	GO:0030014	CCR4-NOT complex	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	116	288
IPR001878	Znf_CCHC	734	749
IPR012562	GUCT	520	617
IPR001650	Helicase_C	329	433

External Links

No external refs found!

Dde_g00876 (emb1138)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation