Lfl_g15635 (PAP(IV), nPAP)

Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none

Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g15635

Target	Alias	Description	ECC score	Gene Family Method
AT2G25850	PAPS2	poly(A) polymerase 2	0.02	OrthoFinder output from all 47 species
AT4G32850	PAP(IV), nPAP	nuclear poly(a) polymerase	0.03	OrthoFinder output from all 47 species
Adi_g102292	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g102293	PAPS2	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g06963	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0102.g044509	PAP(IV), nPAP	poly(A) RNA polymerase & original description: CDS=1-2214	0.04	OrthoFinder output from all 47 species
Azfi_s0209.g058047	PAP(IV), nPAP	poly(A) RNA polymerase & original description: CDS=403-2583	0.03	OrthoFinder output from all 47 species
Ceric.22G023600.1	PAP(IV), nPAP,...	poly(A) RNA polymerase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000037.23	PAPS1	RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase	0.01	OrthoFinder output from all 47 species
Dac_g03375	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g33897	PAPS1	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g13917	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g01604	PAPS1	poly(A) RNA polymerase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_12958	PAPS1	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species
Len_g14535	PAPS1	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
MA_100058g0010	PAP(IV), nPAP	poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
Pir_g08646	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g08262	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Smo169728	PAPS1	RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
Solyc08g066200.3.1	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.04	OrthoFinder output from all 47 species
Tin_g13510	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005199_P002	PAPS1, Zm00001e005199	poly(A) RNA polymerase	0.04	OrthoFinder output from all 47 species
Zm00001e012328_P001	PAPS1, Zm00001e012328	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species
Zm00001e030659_P006	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.05	OrthoFinder output from all 47 species
Zm00001e037202_P005	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070566	adenylyltransferase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007010	PolA_pol_RNA-bd_dom	452	522
IPR007010	PolA_pol_RNA-bd_dom	394	451
IPR002934	Polymerase_NTP_transf_dom	120	199
IPR007012	PolA_pol_cen_dom	63	390

External Links

No external refs found!

Lfl_g15635 (PAP(IV), nPAP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation