AMTR_s00024p00200570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00024.176

Description : RNA biosynthesis.transcriptional activation.Alfin-like transcription factor


Gene families : OG_01_0000328 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000328_tree ,
OG_02_0000344 (LandPlants) Phylogenetic Tree(s): OG_02_0000344_tree ,
OG_03_0000605 (SeedPlants) Phylogenetic Tree(s): OG_03_0000605_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00024p00200570
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
AT3G42790 AL3 alfin-like 3 0.03 Archaeplastida
Gb_11603 No alias Alfin-like transcription factor 0.03 Archaeplastida
LOC_Os11g14010.1 No alias Alfin-like transcription factor 0.04 Archaeplastida
Zm00001e014851_P004 No alias Alfin-like transcription factor 0.03 Archaeplastida
Zm00001e021294_P001 No alias Alfin-like transcription factor 0.04 Archaeplastida
Zm00001e028587_P002 No alias Alfin-like transcription factor 0.03 Archaeplastida
AT3G42790 AL3 alfin-like 3 0.03 LandPlants
AT3G42790 AL3 alfin-like 3 0.03 SeedPlants
Gb_11603 No alias Alfin-like transcription factor 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021998 Alfin 11 147
IPR019787 Znf_PHD-finger 203 251
No external refs found!