MA_10435148g0010


Description : 16.1.5 secondary metabolism.isoprenoids.terpenoids In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.


Gene families : OG_01_0000170 (Gene family) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_10435148g0010
Cluster HCCA cluster: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000403001 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
GSVIVT01030646001 No alias No description available 0.02 Gene family
GSVIVT01030647001 No alias No description available 0.02 Gene family
GSVIVT01033458001 No alias No description available 0.03 Gene family
MA_10025722g0010 No alias No description available 0.02 Gene family
MA_10196363g0010 No alias No description available 0.03 Gene family
MA_10302367g0010 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.04 Gene family
MA_10358510g0010 No alias No description available 0.02 Gene family
MA_10430954g0010 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
MA_10431788g0010 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
MA_10434542g0010 No alias No description available 0.03 Gene family
MA_10436878g0020 No alias No description available 0.03 Gene family
MA_14092g0010 No alias No description available 0.01 Gene family
MA_1830g0010 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
MA_18743g0010 No alias No description available 0.03 Gene family
MA_328490g0010 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
MA_396966g0010 No alias No description available 0.02 Gene family
MA_406056g0010 No alias No description available 0.04 Gene family
MA_70145g0010 No alias No description available 0.01 Gene family
MA_7165770g0010 No alias No description available 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0010333 terpene synthase activity IEA InterProScan
MF GO:0016829 lyase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 334 595
IPR001906 Terpene_synth_N 95 298
No external refs found!