Aop_g65805 (ATLIG1, LIG1)


Aliases : ATLIG1, LIG1

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g65805

Target Alias Description ECC score Gene Family Method Actions
Adi_g109165 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.05 OrthoFinder output from all 47 species
Als_g01152 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.31 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g17352 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
MA_10044742g0010 ATLIG1, LIG1 DNA ligase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g19800 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Ore_g16105 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Ore_g33229 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Pir_g18058 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Tin_g07751 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.05 OrthoFinder output from all 47 species
Zm00001e020139_P002 AtLIG6, LIG6,... DNA ligase (LIG6) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0000782 telomere cap complex IEP HCCA
CC GO:0000783 nuclear telomere cap complex IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033045 regulation of sister chromatid segregation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051983 regulation of chromosome segregation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990879 CST complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 461 665
IPR012308 DNA_ligase_ATP-dep_N 219 394
IPR012309 DNA_ligase_ATP-dep_C 690 801
No external refs found!