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  5. Aop_g60711

Aop_g60711 (ATCAF1, CAF1)


Aliases : ATCAF1, CAF1

Description : not classified & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g60711
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
Ceric.17G046000.1 ATCAF1, CAF1,... not classified & original description: pacid=50617225... 0.05 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12535 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12704 ATCAF1, CAF1 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 343 423
IPR001890 RNA-binding_CRM 222 305
No external refs found!