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  5. Aop_g60257

Aop_g60257


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: none


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g60257

Target Alias Description ECC score Gene Family Method Actions
AT5G54900 ATRBP45A, RBP45A RNA-binding protein 45A 0.05 OrthoFinder output from all 47 species
Adi_g108132 RBP45B, ATRBP45B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03248 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.09G041300.1 Ceric.09G041300 regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ehy_g25604 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
GSVIVT01031780001 ATRBP47B, RBP47B Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Len_g31729 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Nbi_g12374 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pir_g18156 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pnu_g33240 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pp3c12_10910V3.1 Pp3c12_10910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Pp3c12_10960V3.1 Pp3c12_10960 RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Solyc07g064510.3.1 ATRBP45C, Solyc07g064510 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Spa_g51224 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Zm00001e021626_P001 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.01 OrthoFinder output from all 47 species
Zm00001e022780_P001 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 193 259
IPR000504 RRM_dom 402 465
IPR000504 RRM_dom 285 354
No external refs found!