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  5. Lfl_g13325

Lfl_g13325


Description : not classified & original description: none


Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g13325
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ala_g06641 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00455 No alias carotenoid isomerase *(DWARF27) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g31538 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19690 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11607.t1 Aspi01Gene11607 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008838 No alias carotenoid isomerase *(DWARF27) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0386.g067568 No alias not classified & original description: CDS=62-952 0.04 OrthoFinder output from all 47 species
Ceric.02G115700.1 Ceric.02G115700 carotenoid isomerase *(DWARF27) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.3 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Dcu_g02296 No alias carotenoid isomerase *(DWARF27) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12391 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g06957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
LOC_Os08g02210.2 LOC_Os08g02210 Beta-carotene isomerase D27, chloroplastic... 0.05 OrthoFinder output from all 47 species
Len_g25954 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
MA_167711g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g03970.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Mp7g16410.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.02 OrthoFinder output from all 47 species
Msp_g11577 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26733 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g30675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19910 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g09207 No alias carotenoid isomerase *(DWARF27) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021958 No alias not classified & original description: CDS=135-836 0.03 OrthoFinder output from all 47 species
Sam_g06073 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Smo173467 No alias Phytohormones.strigolactone.synthesis.DWARF27... 0.03 OrthoFinder output from all 47 species
Smo99956 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc08g008630.4.1 Solyc08g008630 Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Spa_g05404 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g19072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029191_P001 Zm00001e029191 Beta-carotene isomerase D27, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009143 nucleoside triphosphate catabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0047429 nucleoside triphosphate diphosphatase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025114 D27-like_C 169 250
No external refs found!