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  5. AMTR_s00023p00232870

AMTR_s00023p00232870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.190

Description : Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0006806 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006806_tree ,
OG_02_0007343 (LandPlants) Phylogenetic Tree(s): OG_02_0007343_tree ,
OG_03_0007467 (SeedPlants) Phylogenetic Tree(s): OG_03_0007467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00232870
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AT5G02830 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01025541001 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 Archaeplastida
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 Archaeplastida
Mp3g16970.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.02 Archaeplastida
Pp3c22_3070V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Archaeplastida
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.06 Archaeplastida
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.09 Archaeplastida
GSVIVT01025541001 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 LandPlants
Gb_13517 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 LandPlants
Gb_31448 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 LandPlants
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 LandPlants
Mp3g16970.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.02 LandPlants
Pp3c21_12360V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 LandPlants
Pp3c22_3070V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 LandPlants
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 LandPlants
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.07 LandPlants
GSVIVT01025541001 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 SeedPlants
Gb_13517 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 SeedPlants
Gb_31448 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 SeedPlants
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.03 SeedPlants
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.05 SeedPlants
Zm00001e038437_P002 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 406
IPR002885 Pentatricopeptide_repeat 581 627
IPR002885 Pentatricopeptide_repeat 432 455
IPR002885 Pentatricopeptide_repeat 323 349
IPR002885 Pentatricopeptide_repeat 549 579
No external refs found!