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  5. Lfl_g13081

Lfl_g13081 (SPI)


Aliases : SPI

Description : not classified & original description: none


Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g13081

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.07 OrthoFinder output from all 47 species
Ala_g30609 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003123001 SPI BEACH domain-containing protein A2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_31352 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_31353 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_12084g0010 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp2g15880.1 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0219.g026126 SPI not classified & original description: CDS=210-10721 0.03 OrthoFinder output from all 47 species
Solyc09g065700.3.1 SPI, Solyc09g065700 Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e005644_P001 SPI, Zm00001e005644 Protein SPIRRIG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR023362 PH-BEACH_dom 2910 2966
IPR001680 WD40_repeat 3368 3397
IPR001680 WD40_repeat 3413 3448
IPR000409 BEACH_dom 3005 3283
No external refs found!