1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g12952

Lfl_g12952 (SPT16)


Aliases : SPT16

Description : component *(SPT16) of FACT histone chaperone complex & original description: none


Gene families : OG0000974 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12952

Target Alias Description ECC score Gene Family Method Actions
Ala_g02640 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 39 species
Msp_g13317 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Sam_g16028 No alias component *(SPT16) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species
Spa_g12849 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013719 RTT106/SPT16-like_middle_dom 830 915
IPR000994 Pept_M24 197 429
IPR029148 FACT-Spt16_Nlobe 19 181
IPR013953 FACT_Spt16 551 702
No external refs found!