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  5. Lfl_g12714

Lfl_g12714 (SUF4)


Aliases : SUF4

Description : FLC-binding component *(SUF4) of FRI-C transcription effector complex & original description: none


Gene families : OG0000947 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12714

Target Alias Description ECC score Gene Family Method Actions
Aev_g09455 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Als_g54932 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 39 species
Als_g58747 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 39 species
Aob_g11141 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 39 species
Aspi01Gene11385.t1 SUF4, Aspi01Gene11385 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Dcu_g22754 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.04 OrthoFinder output from all 39 species
Dcu_g23742 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 39 species
Ehy_g19812 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
GSVIVT01015880001 SUF4 RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.01 OrthoFinder output from all 39 species
MA_10435270g0010 SUF4 C2H2 zinc finger transcription factor 0.01 OrthoFinder output from all 39 species
Nbi_g26521 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Ore_g03322 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Pir_g07069 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Ppi_g12837 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.03 OrthoFinder output from all 39 species
Ppi_g61027 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
Spa_g16449 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.01 OrthoFinder output from all 39 species
Tin_g23103 SUF4 FLC-binding component *(SUF4) of FRI-C transcription... 0.02 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!