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  5. Aop_g39120

Aop_g39120 (PARL1, ATNUC-L1, NUC-L1)


Aliases : PARL1, ATNUC-L1, NUC-L1

Description : regulatory protein *(NCL) of rRNA transcription & original description: none


Gene families : OG0001950 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001950_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g39120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00090110 PARL1, ATNUC-L1,... RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.04 OrthoFinder output from all 47 species
AT1G48920 PARL1, ATNUC-L1, NUC-L1 nucleolin like 1 0.06 OrthoFinder output from all 47 species
Adi_g074738 PARL1, ATNUC-L1, NUC-L1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09213 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Ceric.05G016700.1 PARLL1, NUC-L2,... regulatory protein *(NCL) of rRNA transcription &... 0.04 OrthoFinder output from all 47 species
Ceric.13G070500.1 PARLL1, NUC-L2,... regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Ceric.15G060200.1 PARL1, ATNUC-L1,... regulatory protein *(NCL) of rRNA transcription &... 0.06 OrthoFinder output from all 47 species
Cre06.g275100 PARLL1, NUC-L2, ATNUC-L2 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.02 OrthoFinder output from all 47 species
Dde_g18065 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.04 OrthoFinder output from all 47 species
Gb_32672 PARL1, ATNUC-L1, NUC-L1 rDNA chromatin transcription factor (NCL) 0.03 OrthoFinder output from all 47 species
LOC_Os04g52960.1 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.03 OrthoFinder output from all 47 species
LOC_Os08g09350.1 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.04 OrthoFinder output from all 47 species
Len_g47362 PARLL1, NUC-L2, ATNUC-L2 regulatory protein *(NCL) of rRNA transcription &... 0.05 OrthoFinder output from all 47 species
Lfl_g36622 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
MA_10433238g0010 PARL1, ATNUC-L1, NUC-L1 rDNA chromatin transcription factor (NCL) 0.03 OrthoFinder output from all 47 species
MA_11380g0030 PARLL1, NUC-L2, ATNUC-L2 rDNA chromatin transcription factor (NCL) 0.04 OrthoFinder output from all 47 species
Nbi_g25668 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Pir_g19406 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008790 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.04 OrthoFinder output from all 47 species
Sam_g19989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo234317 PARL1, ATNUC-L1, NUC-L1 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.02 OrthoFinder output from all 47 species
Solyc02g014310.4.1 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.04 OrthoFinder output from all 47 species
Tin_g09738 PARL1, ATNUC-L1, NUC-L1 regulatory protein *(NCL) of rRNA transcription &... 0.02 OrthoFinder output from all 47 species
Zm00001e004617_P003 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.03 OrthoFinder output from all 47 species
Zm00001e021609_P004 PARL1, ATNUC-L1,... rDNA chromatin transcription factor (NCL) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP HCCA
CC GO:0000783 nuclear telomere cap complex IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990879 CST complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 463 525
IPR000504 RRM_dom 346 412
No external refs found!