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  5. Lfl_g12476

Lfl_g12476


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12476

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT5G35530 No alias Ribosomal protein S3 family protein 0.04 OrthoFinder output from all 47 species
Aob_g22525 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g11605 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g07331 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.06G062500.1 Ceric.06G062500 component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.12G046300.1 Ceric.12G046300 component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01015110001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01035451001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_26536 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g38000.1 LOC_Os03g38000 component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os07g41750.1 LOC_Os07g41750 component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
MA_120861g0010 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
Pp3c11_22640V3.1 Pp3c11_22640 Ribosomal protein S3 family protein 0.04 OrthoFinder output from all 47 species
Pp3c7_2620V3.1 Pp3c7_2620 Ribosomal protein S3 family protein 0.03 OrthoFinder output from all 47 species
Pp3c9_12170V3.1 Pp3c9_12170 Ribosomal protein S3 family protein 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013681 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g27041 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Solyc07g041310.3.1 Solyc07g041310 component RPS3 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc08g061843.1.1 Solyc08g061843 component RPS3 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g10672 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g30478 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e021687_P001 Zm00001e021687 component RPS3 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e035528_P001 Zm00001e035528 component RPS3 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e040177_P002 Zm00001e040177 component RPS3 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 68 141
IPR001351 Ribosomal_S3_C 154 236
No external refs found!