Aop_g36186

Description : not classified & original description: none

Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g36186

Target	Alias	Description	ECC score	Gene Family Method
Adi_g110755	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.13G087700.1	Ceric.13G087700	not classified & original description: pacid=50636878...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.85	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Gb_06963	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Len_g15468	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436248g0010	No alias	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Ore_g05630	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g15235	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007582_P001	Zm00001e007582	DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	10	150

External Links

No external refs found!