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  5. Aop_g36183

Aop_g36183


Description : not classified & original description: none


Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g36183

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00110240 evm_27.TU.AmTr_v1... Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cba_g15431 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_32086 No alias Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10130.1 LOC_Os01g10130 Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Msp_g39530 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36816 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413790 No alias Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Tin_g03537 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 222 838
No external refs found!