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  5. Lfl_g12022

Lfl_g12022


Description : co-chaperone *(Hsp40) & original description: none


Gene families : OG0000947 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12022
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00203200 evm_27.TU.AmTr_v1... Chaperone protein dnaJ A7A, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
AT4G39960 No alias Molecular chaperone Hsp40/DnaJ family protein 0.03 OrthoFinder output from all 47 species
Adi_g019841 No alias co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054489 No alias co-chaperone *(Hsp40) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079838 No alias co-chaperone *(Hsp40) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G065700.1 Ceric.05G065700 co-chaperone *(Hsp40) & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g10357 No alias co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017355001 No alias Chaperone protein dnaJ A7A, chloroplastic OS=Oryza... 0.04 OrthoFinder output from all 47 species
LOC_Os02g56040.1 LOC_Os02g56040 co-chaperone (Hsp40) 0.04 OrthoFinder output from all 47 species
Pp3c16_18820V3.1 Pp3c16_18820 DNAJ heat shock family protein 0.01 OrthoFinder output from all 47 species
Smo271998 No alias Chaperone protein dnaJ A7A, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Smo430412 No alias Chaperone protein dnaJ A7A, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Spa_g08504 No alias co-chaperone *(Hsp40) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12321 No alias co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02608 No alias co-chaperone *(Hsp40) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016156_P001 Zm00001e016156 co-chaperone (Hsp40) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0031072 heat shock protein binding IEA Interproscan
MF GO:0051082 unfolded protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 85 146
IPR001305 HSP_DnaJ_Cys-rich_dom 229 292
IPR002939 DnaJ_C 204 419
No external refs found!