AMTR_s00023p00075180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00023.39

Description : Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana


Gene families : OG_01_0015462 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015462_tree ,
OG_02_0015310 (LandPlants) Phylogenetic Tree(s): OG_02_0015310_tree ,
OG_03_0015003 (SeedPlants) Phylogenetic Tree(s): OG_03_0015003_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00023p00075180
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.06 Archaeplastida
LOC_Os03g10420.1 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.02 LandPlants
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.05 LandPlants
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 77 107
IPR002885 Pentatricopeptide_repeat 115 164
IPR002885 Pentatricopeptide_repeat 396 443
IPR002885 Pentatricopeptide_repeat 256 304
IPR002885 Pentatricopeptide_repeat 328 374
IPR002885 Pentatricopeptide_repeat 8 57
IPR002885 Pentatricopeptide_repeat 185 234
IPR002885 Pentatricopeptide_repeat 501 525
No external refs found!