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  5. Lfl_g11491

Lfl_g11491


Description : carotenoid isomerase *(DWARF27) & original description: none


Gene families : OG0001572 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001572_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g11491
Cluster HCCA: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00255680 evm_27.TU.AmTr_v1... Beta-carotene isomerase D27, chloroplastic... 0.06 OrthoFinder output from all 47 species
AT1G64680 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.07 OrthoFinder output from all 47 species
Adi_g033681 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g02991 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g49501 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ala_g06641 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Ala_g11103 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Als_g00455 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06285 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31538 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g13955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g19690 No alias carotenoid isomerase *(DWARF27) & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene11607.t1 Aspi01Gene11607 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0386.g067568 No alias not classified & original description: CDS=62-952 0.06 OrthoFinder output from all 47 species
Cba_g29657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G115700.1 Ceric.02G115700 carotenoid isomerase *(DWARF27) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.09G025400.1 Ceric.09G025400 not classified & original description: pacid=50588408... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.3 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.01 OrthoFinder output from all 47 species
Dac_g13831 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g02296 No alias carotenoid isomerase *(DWARF27) & original description: none 0.12 OrthoFinder output from all 47 species
Dcu_g12391 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g06957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g31522 No alias carotenoid isomerase *(DWARF27) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04481 No alias carotenoid isomerase *(DWARF27) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01019663001 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Gb_18729 No alias carotenoid isomerase (DWARF27) 0.08 OrthoFinder output from all 47 species
LOC_Os08g02210.2 LOC_Os08g02210 Beta-carotene isomerase D27, chloroplastic... 0.1 OrthoFinder output from all 47 species
Len_g16141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_167711g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g01750.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Mp6g03970.1 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.02 OrthoFinder output from all 47 species
Mp7g16410.1 No alias Beta-carotene isomerase D27, chloroplastic... 0.01 OrthoFinder output from all 47 species
Msp_g11577 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g26733 No alias carotenoid isomerase *(DWARF27) & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g19910 No alias carotenoid isomerase *(DWARF27) & original description: none 0.12 OrthoFinder output from all 47 species
Pir_g09207 No alias carotenoid isomerase *(DWARF27) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g26521 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g62487 No alias carotenoid isomerase *(DWARF27) & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017141 No alias carotenoid isomerase *(DWARF27) & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g06073 No alias carotenoid isomerase *(DWARF27) & original description: none 0.05 OrthoFinder output from all 47 species
Smo173467 No alias Phytohormones.strigolactone.synthesis.DWARF27... 0.06 OrthoFinder output from all 47 species
Smo99956 No alias Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc08g008630.4.1 Solyc08g008630 Beta-carotene isomerase D27, chloroplastic OS=Oryza... 0.1 OrthoFinder output from all 47 species
Spa_g05404 No alias carotenoid isomerase *(DWARF27) & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g19073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28773 No alias carotenoid isomerase *(DWARF27) & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e029191_P001 Zm00001e029191 Beta-carotene isomerase D27, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0042586 peptide deformylase activity IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025114 D27-like_C 160 242
No external refs found!