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  5. Aop_g27490

Aop_g27490


Description : not classified & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g27490
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AT5G01880 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g13718 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65294.t1 Aspi01Gene65294 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g035115 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g43673 No alias E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.36G023100.1 Ceric.36G023100 not classified & original description: pacid=50568780... 0.03 OrthoFinder output from all 47 species
Dcu_g06871 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g15134 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g25748 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
LOC_Os01g61470.1 LOC_Os01g61470 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os11g02424.1 LOC_Os11g02424 RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_125507g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_73524g0020 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_88044g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013364 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g28688 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Smo137213 ATL5 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc11g005300.2.1 Solyc11g005300 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc11g005310.1.1 Solyc11g005310 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e019438_P001 Zm00001e019438 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!