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  5. Lfl_g11055

Lfl_g11055 (GATB)


Aliases : GATB

Description : component *(GatB) of glutamyl-tRNA-dependent amidotransferase complex & original description: none


Gene families : OG0003791 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003791_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g11055

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00150510 GATB,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.07 OrthoFinder output from all 47 species
AT1G48520 GATB GLU-ADT subunit B 0.08 OrthoFinder output from all 47 species
Adi_g022222 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
Aev_g01284 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.04 OrthoFinder output from all 47 species
Aob_g15473 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
Aop_g03519 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.02 OrthoFinder output from all 47 species
Cba_g02016 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.02 OrthoFinder output from all 47 species
Ceric.1Z079300.1 GATB, Ceric.1Z079300 component *(GatB) of glutamyl-tRNA-dependent... 0.04 OrthoFinder output from all 47 species
Cre14.g627488 GATB Glutamyl-tRNA(Gln) amidotransferase subunit B,... 0.03 OrthoFinder output from all 47 species
Dac_g09585 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
Dcu_g32346 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
Dde_g08532 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.04 OrthoFinder output from all 47 species
Ehy_g02738 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01027938001 GATB Protein biosynthesis.aminoacyl-tRNA synthetase... 0.05 OrthoFinder output from all 47 species
LOC_Os11g34210.2 GATB, LOC_Os11g34210 component GatB of glutamyl-tRNA-dependent... 0.05 OrthoFinder output from all 47 species
Len_g18271 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
MA_889802g0010 GATB component GatB of glutamyl-tRNA-dependent... 0.06 OrthoFinder output from all 47 species
Mp1g29210.1 GATB component GatB of glutamyl-tRNA-dependent... 0.07 OrthoFinder output from all 47 species
Nbi_g13336 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.08 OrthoFinder output from all 47 species
Ore_g17992 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0191.g025293 GATB component *(GatB) of glutamyl-tRNA-dependent... 0.04 OrthoFinder output from all 47 species
Sam_g09704 No alias component *(GatB) of glutamyl-tRNA-dependent... 0.04 OrthoFinder output from all 47 species
Smo120349 GATB Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Smo441971 GATB Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Solyc09g090840.3.1 GATB, Solyc09g090840 component GatB of glutamyl-tRNA-dependent... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006075 Asn/Gln-tRNA_Trfase_suB/E_cat 115 407
IPR018027 Asn/Gln_amidotransferase 446 593
No external refs found!