Aop_g22121 (ATRECQ4A, ATSGS1, RECQ4A)

Aliases : ATRECQ4A, ATSGS1, RECQ4A

Description : helicase component *(RecQ4A) of RTR Holliday junction dissolution complex & original description: none

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g22121

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os04g35420.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.02	OrthoFinder output from all 47 species
Len_g56734	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_30494g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp4g14290.1	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.01	OrthoFinder output from all 47 species
Msp_g21318	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.09	OrthoFinder output from all 47 species
Msp_g27927	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g28718	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0049.g013745	ATRECQ4A, ATSGS1, RECQ4A	not classified & original description: CDS=323-1522	0.05	OrthoFinder output from all 47 species
Solyc07g042010.4.1	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e021028_P001	RECQI1, Zm00001e021028	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004797	thymidine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0019136	deoxynucleoside kinase activity	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
MF	GO:0019206	nucleoside kinase activity	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	735	839
IPR002121	HRDC_dom	1099	1166
IPR018982	RQC_domain	943	1057
IPR011545	DEAD/DEAH_box_helicase_dom	528	695
IPR032284	RecQ_Zn-bd	851	934

External Links

No external refs found!