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  5. Aop_g21865

Aop_g21865


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g21865

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene09212.t1 Aspi01Gene09212 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12627 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.19G065200.1 Ceric.19G065200 not classified & original description: pacid=50576378... 0.04 OrthoFinder output from all 47 species
Dac_g39665 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Nbi_g19610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g58424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023267 No alias not classified & original description: CDS=111-2933 0.04 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e040095_P002 Zm00001e040095 Pentatricopeptide repeat-containing protein At4g30825,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005778 peroxisomal membrane IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016559 peroxisome fission IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031903 microbody membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 532 562
IPR002885 Pentatricopeptide_repeat 118 148
IPR002885 Pentatricopeptide_repeat 229 252
IPR002885 Pentatricopeptide_repeat 464 489
IPR002885 Pentatricopeptide_repeat 672 715
IPR002885 Pentatricopeptide_repeat 352 394
IPR002885 Pentatricopeptide_repeat 53 89
IPR002885 Pentatricopeptide_repeat 590 647
No external refs found!