AMTR_s00002p00179800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.155

Description : Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0012025 (SeedPlants) Phylogenetic Tree(s): OG_03_0012025_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00179800
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01025536001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 Archaeplastida
MA_84938g0010 No alias HCF152 plastidial RNA transcript stability factor 0.02 Archaeplastida
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 Archaeplastida
Zm00001e020088_P001 No alias HCF152 plastidial RNA transcript stability factor 0.02 Archaeplastida
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 LandPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 LandPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 565
IPR002885 Pentatricopeptide_repeat 268 297
IPR002885 Pentatricopeptide_repeat 620 662
No external refs found!