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  5. AMTR_s00002p00179800

AMTR_s00002p00179800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.155

Description : Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana


Gene families : OG_01_0001060 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001060_tree ,
OG_02_0001470 (LandPlants) Phylogenetic Tree(s): OG_02_0001470_tree ,
OG_03_0012025 (SeedPlants) Phylogenetic Tree(s): OG_03_0012025_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00179800
Cluster HCCA: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G09650 CRM3, HCF152 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01025536001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 Archaeplastida
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 Archaeplastida
MA_84938g0010 No alias HCF152 plastidial RNA transcript stability factor 0.02 Archaeplastida
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 Archaeplastida
Zm00001e020088_P001 No alias HCF152 plastidial RNA transcript stability factor 0.02 Archaeplastida
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.02 LandPlants
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 LandPlants
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 LandPlants
Solyc01g088750.3.1 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.02 LandPlants
Zm00001e019596_P001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.07 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 538 565
IPR002885 Pentatricopeptide_repeat 268 297
IPR002885 Pentatricopeptide_repeat 620 662
No external refs found!