Aop_g21148 (RNR1, ATMTRNASEII, EMB2730)

Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: none

Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g21148

Target	Alias	Description	ECC score	Gene Family Method
Als_g22996	RNR1,...	exoribonuclease *(RNase R) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G013800.1	RNR1,...	exoribonuclease *(RNase R) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.16G035800.1	RNR1,...	exoribonuclease *(RNase R) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g07138	RNR1,...	exoribonuclease *(RNase R) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_33852	RNR1,...	exoribonuclease (RNase R)	0.05	OrthoFinder output from all 47 species
Len_g09802	RNR1,...	exoribonuclease *(RNase R) & original description: none	0.03	OrthoFinder output from all 47 species
Mp3g07060.1	RNR1,...	exoribonuclease (RNase R)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011986	RNR1,...	exoribonuclease *(RNase R) & original description: CDS=1-2217	0.04	OrthoFinder output from all 47 species
Tin_g13225	RNR1,...	exoribonuclease *(RNase R) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001900	RNase_II/R	382	677

External Links

No external refs found!