Aop_g21105 (HSI2, VAL1)

Aliases : HSI2, VAL1

Description : LAV-VAL-type transcription factor & original description: none

Gene families : OG0001383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001383_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g21105
Cluster	HCCA: Cluster_269

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene22980.t1	HSL1, VAL2,...	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g11182	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g14528	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	217	317

External Links

No external refs found!