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  5. Aop_g20834

Aop_g20834


Description : not classified & original description: none


Gene families : OG0006017 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006017_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g20834
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
Mp1g01380.1 No alias GTP-binding protein ERG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g32114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g081660.3.1 Solyc02g081660 GTP-binding protein ERG OS=Antirrhinum majus... 0.02 OrthoFinder output from all 47 species
Zm00001e021585_P001 Zm00001e021585 GTP-binding protein ERG OS=Antirrhinum majus... 0.02 OrthoFinder output from all 47 species
Zm00001e040020_P003 Zm00001e040020 GTP-binding protein ERG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 481 550
IPR006073 GTP-bd 271 397
No external refs found!