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  5. Lfl_g10679

Lfl_g10679


Description : CORVET-specific component *(VPS3) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0005975 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0005975_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10679
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Ala_g21133 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Als_g23233 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.01 OrthoFinder output from all 39 species
Aspi01Gene42562.t1 Aspi01Gene42562 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Ceric.1Z286500.1 Ceric.1Z286500 not classified & original description: pacid=50637237... 0.09 OrthoFinder output from all 39 species
Dde_g05948 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Len_g08857 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.01 OrthoFinder output from all 39 species
Msp_g14567 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.05 OrthoFinder output from all 39 species
Nbi_g03840 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Pir_g13040 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Ppi_g08950 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Sacu_v1.1_s0075.g017384 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Spa_g12642 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 39 species
Tin_g13636 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001180 CNH_dom 270 438
IPR000547 Clathrin_H-chain/VPS_repeat 927 1005
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 1018 1125
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 648 716
No external refs found!