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  5. Aop_g20649

Aop_g20649


Description : FSD2-interacting component of plastid-encoded RNA polymerase & original description: none


Gene families : OG0005190 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005190_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g20649
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15375.t1 Aspi01Gene15375 FSD2-interacting component of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Azfi_s0420.g069157 No alias FSD2-interacting component of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Dac_g11766 No alias FSD2-interacting component of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Dde_g08251 No alias FSD2-interacting component of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Lfl_g11242 No alias FSD2-interacting component of plastid-encoded RNA... 0.03 OrthoFinder output from all 47 species
Pp3c19_21450V3.1 Pp3c19_21450 No annotation 0.02 OrthoFinder output from all 47 species
Smo74502 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Spa_g53932 No alias FSD2-interacting component of plastid-encoded RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e021412_P001 Zm00001e021412 FSD2-interacting component of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
MF GO:0008658 penicillin binding IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!