Aop_g20548 (CTF18)

Aliases : CTF18

Description : not classified & original description: none

Gene families : OG0003934 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003934_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g20548

Target	Alias	Description	ECC score	Gene Family Method
AT1G04730	CTF18	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
Ceric.10G031900.1	CTF18, Ceric.10G031900	not classified & original description: pacid=50612692...	0.03	OrthoFinder output from all 47 species
LOC_Os03g15810.1	CTF18, LOC_Os03g15810	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g16010.1	CTF18	Replication factor C subunit 1 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Solyc09g091650.3.1	CTF18, Solyc09g091650	Replication factor C subunit 1 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	353	484

External Links

No external refs found!