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  5. Aop_g20539

Aop_g20539 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g20539

Target Alias Description ECC score Gene Family Method Actions
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04487 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02016 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06805 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_13707 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g26937 HVT1, ATVT-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001374 R3H_dom 83 138
IPR007502 Helicase-assoc_dom 798 890
IPR001650 Helicase_C 615 733
IPR011545 DEAD/DEAH_box_helicase_dom 248 403
IPR011709 DEAD-box_helicase_OB_fold 958 1045
No external refs found!