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  5. Lfl_g10579

Lfl_g10579


Description : component *(RBM26) of PAXT nucleoplasmic activation complex & original description: none


Gene families : OG0001970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10579

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00062910 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Adi_g010440 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Adi_g055514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15540 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.06 OrthoFinder output from all 47 species
Aob_g09082 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Cba_g13844 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Cba_g23611 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Ceric.14G069200.1 Ceric.14G069200 component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ceric.28G067800.1 Ceric.28G067800 component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Dcu_g44802 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ehy_g29853 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.02 OrthoFinder output from all 47 species
Gb_08836 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 OrthoFinder output from all 47 species
MA_33944g0010 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.05 OrthoFinder output from all 47 species
Ore_g27253 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Pir_g10450 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Pp3c2_22950V3.1 Pp3c2_22950 zinc finger (CCCH-type) family protein / RNA recognition... 0.02 OrthoFinder output from all 47 species
Ppi_g49412 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Sam_g29691 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Smo437689 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Solyc02g086510.4.1 Solyc02g086510 Zinc finger CCCH domain-containing protein 41... 0.02 OrthoFinder output from all 47 species
Solyc12g035250.3.1 Solyc12g035250 Zinc finger CCCH domain-containing protein 41... 0.04 OrthoFinder output from all 47 species
Tin_g11114 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Zm00001e008334_P001 Zm00001e008334 Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 12 78
IPR000504 RRM_dom 644 696
No external refs found!