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  5. Aop_g18482

Aop_g18482


Description : component *(bS21c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g18482
Cluster HCCA: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
AT3G27160 GHS1 Ribosomal protein S21 family protein 0.05 OrthoFinder output from all 47 species
Aev_g09196 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g01448 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g02683 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007465 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g02864 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g08732 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.13G030700.1 Ceric.13G030700 component *(bS21c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Cre01.g017300 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Dcu_g41032 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g00353 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
LOC_Os02g09590.1 GHS1, LOC_Os02g09590 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.07 OrthoFinder output from all 47 species
Len_g15740 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Lfl_g02717 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
MA_249305g0010 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.07 OrthoFinder output from all 47 species
Mp4g21580.1 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.11 OrthoFinder output from all 47 species
Nbi_g05106 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g01870 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g05303 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c10_22890V3.1 GHS1, Pp3c10_22890 Ribosomal protein S21 family protein 0.01 OrthoFinder output from all 47 species
Ppi_g01614 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007775 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Smo444102 No alias Protein biosynthesis.organelle translation... 0.04 OrthoFinder output from all 47 species
Solyc02g068090.3.1 GHS1, Solyc02g068090 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.03 OrthoFinder output from all 47 species
Tin_g07965 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e013920_P001 GHS1, Zm00001e013920 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.01 OrthoFinder output from all 47 species
Zm00001e025066_P001 GHS1, Zm00001e025066 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001911 Ribosomal_S21 116 169
No external refs found!