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  5. Aop_g17524

Aop_g17524


Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking & original description: none


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g17524
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01033437001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00348 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_15078 No alias DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g29901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43213 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Pir_g08966 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.07 OrthoFinder output from all 47 species
Ppi_g06927 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Tin_g14052 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 199 381
IPR001650 Helicase_C 434 531
No external refs found!