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  5. Lfl_g10282

Lfl_g10282


Description : component *(ADA3) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10282
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT4G29790 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.04 OrthoFinder output from all 47 species
AT5G22450 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.04 OrthoFinder output from all 47 species
Adi_g011998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g025103 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060523 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05137 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Als_g29245 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Als_g49585 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Aob_g10990 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aob_g10991 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aspi01Gene24818.t1 Aspi01Gene24818 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene32698.t1 Aspi01Gene32698 component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Azfi_s0021.g015784 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s2452.g111479 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ceric.03G067900.1 Ceric.03G067900 component *(ADA3) of SAGA transcription co-activator... 0.15 OrthoFinder output from all 47 species
Ceric.34G015100.1 Ceric.34G015100 component *(ADA3) of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
Dac_g32253 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Dcu_g46147 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
GSVIVT01001003001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.1 OrthoFinder output from all 47 species
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Gb_30047 No alias component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g73620.1 LOC_Os01g73620 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
LOC_Os05g01690.1 LOC_Os05g01690 component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species
LOC_Os05g28300.1 LOC_Os05g28300 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Len_g10698 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Len_g35259 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.08 OrthoFinder output from all 47 species
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.09 OrthoFinder output from all 47 species
Msp_g14668 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Nbi_g18247 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ore_g18819 No alias component *(ADA3) of SAGA transcription co-activator... 0.09 OrthoFinder output from all 47 species
Pir_g13632 No alias component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Pir_g43188 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ppi_g05349 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011817 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g48948 No alias component *(ADA3) of SAGA transcription co-activator... 0.12 OrthoFinder output from all 47 species
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 OrthoFinder output from all 47 species
Solyc07g040980.3.1 Solyc07g040980 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Solyc11g006960.2.1 Solyc11g006960 component ADA3 of SAGA transcription co-activator complex 0.08 OrthoFinder output from all 47 species
Spa_g26204 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Tin_g01294 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Zm00001e018678_P002 Zm00001e018678 component ADA3 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
Zm00001e027665_P001 Zm00001e027665 component ADA3 of SAGA transcription co-activator complex 0.09 OrthoFinder output from all 47 species
Zm00001e029688_P001 Zm00001e029688 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 956 1060
No external refs found!