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  5. Lfl_g10215

Lfl_g10215 (APUM4, PUM4)


Aliases : APUM4, PUM4

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10215

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.02 OrthoFinder output from all 47 species
AT3G10360 APUM4, PUM4 pumilio 4 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.02 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g016234 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082437 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12103 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G029200.1 PUM1, APUM1,... not classified & original description: pacid=50569734... 0.02 OrthoFinder output from all 47 species
Dac_g27807 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02392 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04043 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_31285 APUM2, PUM2 Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g62650.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_12280g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_23070g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09055 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006119 No alias phospholipase-A1 *(PC-PLA1) & original description: CDS=1-4779 0.03 OrthoFinder output from all 47 species
Sam_g10568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g05236 PUM3, APUM3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 1008 1042
IPR001313 Pumilio_RNA-bd_rpt 1054 1083
IPR001313 Pumilio_RNA-bd_rpt 791 825
IPR001313 Pumilio_RNA-bd_rpt 935 970
IPR001313 Pumilio_RNA-bd_rpt 863 896
IPR001313 Pumilio_RNA-bd_rpt 905 930
IPR001313 Pumilio_RNA-bd_rpt 974 1005
IPR001313 Pumilio_RNA-bd_rpt 828 860
IPR012940 NABP 385 786
No external refs found!