1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g10188

Lfl_g10188


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g10188
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
AT1G02080 No alias transcription regulators 0.09 OrthoFinder output from all 47 species
Ala_g12815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.09 OrthoFinder output from all 47 species
Als_g17486 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aob_g22134 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Azfi_s0065.g035985 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Cba_g12926 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.34G056500.1 Ceric.34G056500 scaffold component *(NOT1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre14.g632950 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g02066 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
GSVIVT01018178001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
LOC_Os10g40780.1 LOC_Os10g40780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Len_g12091 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_100304g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_1121588g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species
Nbi_g08953 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g16116 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Pir_g16782 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g40588 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.04 OrthoFinder output from all 47 species
Solyc01g090780.3.1 Solyc01g090780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.08 OrthoFinder output from all 47 species
Tin_g16815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Zm00001e000031_P001 Zm00001e000031 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Zm00001e039114_P001 Zm00001e039114 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061608 nuclear import signal receptor activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032193 CNOT1_TTP_bind 655 820
IPR024557 CNOT1_dom_4 1337 1478
IPR032194 CNOT1_HEAT 473 621
IPR007196 CCR4-Not_Not1_C 2073 2440
IPR032191 CNOT1_CAF1_bind 985 1204
No external refs found!