Aop_g14403 (CSB3, CLB4, GCPE, HDS, ISPG)

Aliases : CSB3, CLB4, GCPE, HDS, ISPG

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase & original description: none

Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g14403

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00175p00057810	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.05	OrthoFinder output from all 47 species
AT5G60600	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.06	OrthoFinder output from all 47 species
Azfi_s0155.g053656	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.05	OrthoFinder output from all 47 species
Cba_g53697	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Cba_g71707	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Ceric.17G077300.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.02	OrthoFinder output from all 47 species
Cre12.g490350	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.01	OrthoFinder output from all 47 species
Dac_g01725	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.07	OrthoFinder output from all 47 species
Dde_g07326	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.02	OrthoFinder output from all 47 species
GSVIVT01025182001	CSB3, CLB4,...	Secondary metabolism.terpenoids.methylerythritol...	0.03	OrthoFinder output from all 47 species
Gb_01895	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.06	OrthoFinder output from all 47 species
LOC_Os02g39160.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.03	OrthoFinder output from all 47 species
Len_g40852	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Lfl_g05647	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.02	OrthoFinder output from all 47 species
Mp5g09870.1	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.02	OrthoFinder output from all 47 species
Nbi_g10591	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003566	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase &...	0.03	OrthoFinder output from all 47 species
Zm00001e015046_P001	CSB3, CLB4,...	4-hydroxy-3-methylbut-2-enyl diphosphate synthase	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEA	Interproscan
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004588	IspG_bac-typ	87	728

External Links

No external refs found!

Aop_g14403 (CSB3, CLB4, GCPE, HDS, ISPG)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation