Aliases : GR-RBP4, GRP4
Description : RNA editing factor *(ORRM3) & original description: none
Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G54580 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g022151 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g117859 | ATRZ-1A | RNA chaperone *(RZ1) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cre17.g729150 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
Ehy_g21349 | CCR2, ATGRP7,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01016195001 | No alias | Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01021024001 | GRP2, ATGRP2, GR-RBP2 | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
Len_g21305 | GR-RBP4, GRP4 | RNA editing factor *(ORRM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_85849g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Pp3c12_23410V3.1 | GRP2, ATGRP2,... | glycine-rich RNA-binding protein 3 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c7_6560V3.1 | CCR2, ATGRP7,... | cold, circadian rhythm, and RNA binding 1 | 0.01 | OrthoFinder output from all 47 species | |
Ppi_g06306 | No alias | RNA chaperone *(RZ1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g57632 | CCR2, ATGRP7,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g14736 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g38661 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g00653 | GR-RBP5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e035491_P001 | GR-RBP5, Zm00001e035491 | RNA editing factor (ORRM) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
MF | GO:0004730 | pseudouridylate synthase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
MF | GO:0016758 | hexosyltransferase activity | IEP | HCCA |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
MF | GO:0016836 | hydro-lyase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
CC | GO:0034457 | Mpp10 complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 61 | 131 |
No external refs found! |