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  5. Aop_g14238

Aop_g14238


Description : mitochondrial RNA splicing factor *(ABO5) & original description: none


Gene families : OG0005617 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14238
Cluster HCCA: Cluster_316

Target Alias Description ECC score Gene Family Method Actions
Adi_g081393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56987 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene24227.t1 Aspi01Gene24227 mitochondrial RNA splicing factor *(ABO5) & original... 0.03 OrthoFinder output from all 47 species
Dac_g45786 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g28454 No alias mitochondrial RNA splicing factor *(ABO5) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os02g13340.1 ABO5, LOC_Os02g13340 ABO5 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc03g121110.3.1 ABO5, Solyc03g121110 ABO5 mitochondrial RNA splicing factor 0.06 OrthoFinder output from all 47 species
Zm00001e024924_P002 ABO5, Zm00001e024924 ABO5 mitochondrial RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 622 679
IPR033443 PPR_long 305 447
IPR002885 Pentatricopeptide_repeat 564 613
IPR002885 Pentatricopeptide_repeat 501 526
IPR002885 Pentatricopeptide_repeat 533 561
No external refs found!