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  5. Aop_g14198

Aop_g14198


Description : not classified & original description: none


Gene families : OG0004397 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g14198

Target Alias Description ECC score Gene Family Method Actions
Als_g01956 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g01318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G030500.1 PAB1, Ceric.03G030500 not classified & original description: pacid=50572066... 0.04 OrthoFinder output from all 47 species
Dac_g22253 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g10701 ATRBP47C, RBP47C not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g17086 PAB2, PABP2, ATPAB2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g06122 PAB6 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_17348 PAB6 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g11847 PAB1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g11431 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_91352g0010 ATRBP45C no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g43779 PAB1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g22903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29710 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g04608 PABP4, PAB4 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 464 520
IPR000504 RRM_dom 364 433
No external refs found!