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  5. Aop_g13747

Aop_g13747 (ATRAB1A, ATRABD2B, RAB1A)


Aliases : ATRAB1A, ATRABD2B, RAB1A

Description : D-class RAB GTPase & original description: none


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13747

Target Alias Description ECC score Gene Family Method Actions
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.05 OrthoFinder output from all 47 species
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.04 OrthoFinder output from all 47 species
Cba_g55676 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.39G002700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01023224001 ATFP8, RABD1, ATRABD1 Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
LOC_Os01g37800.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Lfl_g22787 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g46440 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14298 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17943 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g07908 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.03 OrthoFinder output from all 47 species
Smo228158 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Solyc08g078070.4.1 RAB1C, ATRAB1C,... D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g05573 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g48359 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e027735_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 98 258
No external refs found!