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  5. Aop_g13573

Aop_g13573 (HOS1)


Aliases : HOS1

Description : scaffold nucleoporin of nuclear pore complex *(ELYS) & original description: none


Gene families : OG0005065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g13573
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AT2G39810 HOS1 ubiquitin-protein ligases 0.03 OrthoFinder output from all 47 species
Ala_g10365 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Als_g56636 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Cba_g25679 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Ceric.36G007400.1 HOS1, Ceric.36G007400 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Dcu_g07754 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01005813001 HOS1 Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52700.1 HOS1, LOC_Os03g52700 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
MA_573521g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Nbi_g02490 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Pir_g10456 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Sam_g19447 No alias scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Solyc08g078320.3.1 HOS1, Solyc08g078320 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g09103 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Spa_g41406 HOS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16985 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.05 OrthoFinder output from all 47 species
Zm00001e005599_P002 HOS1, Zm00001e005599 ELYS scaffold nucleoporin of nuclear pore complex 0.01 OrthoFinder output from all 47 species
Zm00001e012079_P002 HOS1, Zm00001e012079 ELYS scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025151 ELYS_dom 310 602
No external refs found!