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  5. Aop_g12393

Aop_g12393


Description : subunit theta *(CCT8) of CCT chaperonin folding complex & original description: none


Gene families : OG0006803 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006803_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00079950 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
AT3G03960 No alias TCP-1/cpn60 chaperonin family protein 0.07 OrthoFinder output from all 47 species
Ala_g08900 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g030085 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.06 OrthoFinder output from all 47 species
Cba_g03961 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Ceric.23G020400.1 Ceric.23G020400 subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000157.20 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
Cre03.g168450 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
Dac_g02248 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.05 OrthoFinder output from all 47 species
Dcu_g02964 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01033394001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.05 OrthoFinder output from all 47 species
LOC_Os03g59020.1 LOC_Os03g59020 CCT8 subunit theta of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
Len_g04761 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.05 OrthoFinder output from all 47 species
MA_100776g0010 No alias CCT8 subunit theta of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
Mp6g01500.1 No alias CCT8 subunit theta of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species
Sam_g19951 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Solyc01g088080.3.1 Solyc01g088080 CCT8 subunit theta of CCT chaperonin folding complex 0.03 OrthoFinder output from all 47 species
Spa_g04596 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Spa_g42414 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.02 OrthoFinder output from all 47 species
Spa_g56213 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Tin_g01051 No alias subunit theta *(CCT8) of CCT chaperonin folding complex... 0.05 OrthoFinder output from all 47 species
Zm00001e011242_P002 Zm00001e011242 CCT8 subunit theta of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
Zm00001e024443_P002 Zm00001e024443 CCT8 subunit theta of CCT chaperonin folding complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 38 528
No external refs found!