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  5. Aop_g12168

Aop_g12168


Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g12168
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
AT2G18020 EMB2296 Ribosomal protein L2 family 0.19 OrthoFinder output from all 47 species
AT4G36130 No alias Ribosomal protein L2 family 0.18 OrthoFinder output from all 47 species
Adi_g047038 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Adi_g113531 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g12035 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g27868 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g38531 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g43864 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Als_g63414 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene06611.t1 Aspi01Gene06611 component *(uL2) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aspi01Gene42112.t1 Aspi01Gene42112 component *(uL2) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g37121 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G015000.1 Ceric.01G015000 component *(uL2) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.30G024600.1 Ceric.30G024600 component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020965.22 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder output from all 47 species
Cre12.g535851 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
Dac_g02131 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Dcu_g05184 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
LOC_Os12g38000.1 LOC_Os12g38000 component RPL8 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Len_g27953 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g24495 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
MA_10431163g0010 No alias component RPL8 of LSU proteome component 0.08 OrthoFinder output from all 47 species
MA_219740g0010 No alias component RPL8 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp7g01860.1 EMB2296 component RPL8 of LSU proteome component 0.2 OrthoFinder output from all 47 species
Mp7g08730.1 EMB2296 component RPL8 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Msp_g07633 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g25715 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Ore_g18846 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g18847 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g12813 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g46161 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Pp3c12_10200V3.1 EMB2296, Pp3c12_10200 Ribosomal protein L2 family 0.08 OrthoFinder output from all 47 species
Pp3c13_23630V3.1 EMB2296, Pp3c13_23630 Ribosomal protein L2 family 0.11 OrthoFinder output from all 47 species
Pp3c4_12690V3.1 EMB2296, Pp3c4_12690 Ribosomal protein L2 family 0.12 OrthoFinder output from all 47 species
Pp3c4_12720V3.1 EMB2296, Pp3c4_12720 Ribosomal protein L2 family 0.12 OrthoFinder output from all 47 species
Ppi_g33659 EMB2296 component *(uL2) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g60464 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g13695 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Sam_g13696 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Smo170971 EMB2296 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Solyc07g063890.2.1 Solyc07g063890 component RPL8 of LSU proteome component 0.17 OrthoFinder output from all 47 species
Solyc12g005330.2.1 Solyc12g005330 component RPL8 of LSU proteome component 0.21 OrthoFinder output from all 47 species
Spa_g30832 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Spa_g39107 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Spa_g52209 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Tin_g00494 No alias component *(uL2) of large ribosomal-subunit (LSU)... 0.16 OrthoFinder output from all 47 species
Zm00001e002931_P001 EMB2296, Zm00001e002931 component RPL8 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Zm00001e018178_P001 EMB2296, Zm00001e018178 component RPL8 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Zm00001e033350_P001 EMB2296, Zm00001e033350 component RPL8 of LSU proteome component 0.19 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 14 90
IPR022669 Ribosomal_L2_C 98 225
No external refs found!