Lfl_g09793 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A

Description : component *(NRPE5) of RNA polymerase V complex & original description: none


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g09793

Target Alias Description ECC score Gene Family Method Actions
Ala_g15567 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Dac_g19381 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g15170 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
Solyc03g025570.2.1 NRPD5,... subunit 5 of RNA polymerase 0.03 OrthoFinder output from all 47 species
Spa_g00199 NRPD5,... component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e007759_P002 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 136 208
IPR005571 RNA_pol_Rpb5_N 9 93
No external refs found!