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  5. Aop_g11380

Aop_g11380 (AT-GT2, GT2)


Aliases : AT-GT2, GT2

Description : Trihelix-type transcription factor & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g11380

Target Alias Description ECC score Gene Family Method Actions
AT1G76880 No alias Duplicated homeodomain-like superfamily protein 0.04 OrthoFinder output from all 47 species
Als_g40404 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0506.g073955 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0531.g075823 AT-GT2, GT2 Trihelix-type transcription factor & original... 0.06 OrthoFinder output from all 47 species
Cba_g04204 AT-GT2, GT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G031000.1 Ceric.03G031000 Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.18G079000.1 AT-GT2, GT2,... Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dcu_g03068 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g24833 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g02240.1 AT-GT2, GT2,... transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
LOC_Os04g45750.1 LOC_Os04g45750 transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
Lfl_g19944 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01302 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60651 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g22480 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48438 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g06396 AT-GT2, GT2 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 156 241
IPR044822 Myb_DNA-bind_4 452 540
No external refs found!