1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g09747

Lfl_g09747 (EDA13, EDA19, SWA1)


Aliases : EDA13, EDA19, SWA1

Description : SSU processome assembly factor *(SWA1) & original description: none


Gene families : OG0005162 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005162_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g09747

Target Alias Description ECC score Gene Family Method Actions
Dac_g03743 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.02 OrthoFinder output from all 47 species
Len_g00656 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.02 OrthoFinder output from all 47 species
Mp4g00830.1 EDA13, EDA19, SWA1 SSU processome assembly factor (SWA1) 0.02 OrthoFinder output from all 47 species
Pnu_g25206 EDA13, EDA19, SWA1 SSU processome assembly factor *(SWA1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09628 No alias SSU processome assembly factor *(SWA1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003879 ATP phosphoribosyltransferase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 379 520
IPR001680 WD40_repeat 123 159
IPR001680 WD40_repeat 247 294
IPR001680 WD40_repeat 182 202
No external refs found!